Setting expression matrix assay

LabKey Support Forum
Setting expression matrix assay karenchait841  2020-11-05 01:19
Status: Active
 

Hello, I am trying to set up Labkey as our labs database. Some of the projects include expression matrix data but the assay format is not as I expected. If I understand correctly in the Samples Type the columns are the samples so it is not an annotation file for samples, and the Assay List is the expression matrix but in a list format and not a matrix. Is there a different way to do it? For now I uploaded the data to a subfolder defined as study, but the genes annotations can't be integrated with the data.
Thanks for any advice,
Karen

 
 
chetc (LabKey Support) responded:  2020-12-30 13:28
Status: Closed

Hello Karen,

I don't think I am fully grasping what you are asking but if you take a look at the doc below you may find what you are looking for. It goes over how to create an expression matrix assay design and how to add an annotation set.

https://www.labkey.org/Documentation/wiki-page.view?name=geoMicroarrayTutorial#feature

Thanks,
Chet