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HIV Study Tutorial
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"msInpecterror.log" attached to message "java error while running msInspect"

08 九月 2008 19:57:35,921 INFO : C:\Program Files\Java\jre6\bin\java output 08 九月 2008 19:57:35,921 INFO : ======================================= 08 九月 2008 19:57:35,921 INFO : running: C:\Program Files\Java\jre6\bin\java -client -Xmx1024M -jar C:\Program Files\LabKey Server\bin\viewerApp.jar --findpeptides --out=080815_Yi_B_SCX_8.peptides.tsv ..\..\..\080815_Yi_B_SCX_8.mzXML 08 九月 2008 19:57:38,015...

"cpas[1].log.1" attached to message "CPAS MS2 problem"

24 Feb 2006 21:08:31,570 DEBUG FastaDbLoader : Fri Feb 24 21:08:31 PST 2006 Entering insertIdentifiers, before collecting unparsed identifiers from temp table 24 Feb 2006 21:09:20,804 DEBUG FastaDbLoader : Fri Feb 24 21:09:20 PST 2006 In insertIdentifiers, before inserting parsed identifier batch into temp table 24 Feb 2006 21:09:24,773 DEBUG FastaDbLoader : Fri Feb 24 21:09:24 PST 2006 In insertIdentifiers,...

HIV Disease Progression - Demo Study-ViralLoad (NASBA Method)-2019-04-11-0937.tsv

Participant ID Date Day ViralLoad (NASBA Method) Treatment Group ARVRegime Type 101344 4/30/2008 3 100 ARV ETR 101344 5/28/2008 31 193324 ARV ETR 101344 6/25/2008 59 59582 ARV ETR 101344 7/23/2008 87 702 ARV ETR 101344 8/20/2008 115 309 ARV ETR 101344 9/17/2008 143 720 ARV ETR 101344 10/15/2008 171 287 ARV ETR 101344 11/12/2008 199 183 ARV ETR 101344 12/10/2008 227 149 ARV ETR 101344 1/7/2009 255...

test1_MAGEML.xml

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test1_MAGEML.xml

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test1_MAGEML.xml

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07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

Troubleshoot Installation and Configuration

In case of errors or other problems when installing and running LabKey Server, first review installation basics and options linked in the topic: config. This topic provides additional troubleshooting suggestions if the instructions in that topic do not resolve the issue. LabKey Logs Log Rotation and Storage Service Startup Must Create labkey-tmp Location Linux Service Troubleshooting...

Lab Results.xls

data ParticipantID Source_Lsid Date Day CD4+ Lymphs Hemoglobin Cohort Viral_Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227 772 1591 15.0 101344 2009-01-07...

Lab Results.xls

data Participant ID Source Lsid Date Day CD4+ (cells/mm3) Lymphs (cells/mm3) Hemoglobin Cohort Viral Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227...

"mixture.txt" attached to message "msInspect"

# algorithm=org.fhcrc.cpas.tools.FeatureStrategyCombined # date=Wed Jan 25 18:23:44 EST 2006 # java.vendor=Sun Microsystems Inc. # java.version=1.5.0_06 # revision=2395 # user.name=piecheng scan time mz accurateMZ mass intensity charge chargeStates kl background median peaks scanFirst scanLast scanCount totalIntensity description 56 55.014 521.0833 false 0.0 7.0122375 0 1 -1.0 5.063446 0.0...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...