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HIV Study Tutorial
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"logfile-error.txt" attached to message "NCBI database - annotatins problem?"

17 Dec 2010 16:53:15,752 INFO : Mascot search for 01 17 Dec 2010 16:53:15,752 INFO : ======================================= 17 Dec 2010 16:53:15,846 INFO : Starting to run task 'org.labkey.ms2.pipeline.FastaCheckTask' at location 'webserver-fasta-check' 17 Dec 2010 16:53:15,846 INFO : Check FASTA validity 17 Dec 2010 16:53:15,846 INFO : ======================================= 17 Dec 2010 16:53:15,846...

"MTP_A06.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

19 Jun 2009 11:51:49,085 INFO : Copying C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\MTP_A06.mzXML to C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\mascot\Argo_Mascot\MTP_A06.work\MTP_A06.mzXML 19 Jun 2009 11:52:23,225 INFO : MzXML2Search output 19 Jun 2009 11:52:24,507 INFO : ======================================= 19 Jun 2009 11:52:24,538 INFO : Working directory is C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\mascot\Argo_Mascot\MTP_A06.work...

"Integral_SCA#4.log.txt" attached to message "Problem with running sequest searching"

31 十月 2008 08:46:01,953 INFO : Sequest search for Integral_SCA#4 31 十月 2008 08:46:01,953 INFO : ======================================= 31 十月 2008 08:46:01,984 INFO : Check FASTA validity 31 十月 2008 08:46:01,984 INFO : ======================================= 31 十月 2008 08:46:01,984 INFO : Checking sequence file validity of C:\database\T.vaginalis_20050331.aa.fasta 31 十月 2008 08:46:04,937 INFO...

"mascot mod error Oct08.rtf" attached to message "problem with searching mascot with Mods"

20 Oct 2008 10:40:41,075 INFO : Mascot search for kjo63_08jul18_21_40prot_1to1_20uL 20 Oct 2008 10:40:41,075 INFO : ======================================= 20 Oct 2008 10:40:41,325 INFO : Check FASTA validity 20 Oct 2008 10:40:41,340 INFO : ======================================= 20 Oct 2008 10:40:41,356 INFO : 20 Oct 2008 10:40:49,981 INFO : MzXML2Search output 20 Oct 2008 10:40:49,981 INFO :...

"error.log" attached to message "Enzyme is not available in mascot seaching"

27 八月 2008 17:33:37,203 INFO : Check FASTA validity 27 八月 2008 17:33:37,203 INFO : ======================================= 27 八月 2008 17:33:37,203 INFO : 27 八月 2008 17:33:40,281 INFO : MzXML2Search output 27 八月 2008 17:33:40,281 INFO : ======================================= 27 八月 2008 17:33:40,281 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_1.mzXML 27 八月 2008 17:33:40,546 INFO : 27...

"080207-2.log" attached to message "Basic Install Problem - Sequest Queue"

12 Feb 2009 16:02:21,640 INFO : Sequest search for 080207-2 12 Feb 2009 16:02:21,640 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Check FASTA validity 12 Feb 2009 16:02:22,171 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Checking sequence file validity of C:\database\uniprot-js614.fasta 12 Feb 2009 16:02:23,078 INFO : 12 Feb...

"BothwithError.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 20:43:36,171 INFO : Check FASTA validity 30 八月 2008 20:43:36,171 INFO : ======================================= 30 八月 2008 20:43:36,171 INFO : 30 八月 2008 20:43:37,156 INFO : MzXML2Search output 30 八月 2008 20:43:37,156 INFO : ======================================= 30 八月 2008 20:43:37,156 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_10.mzXML 30 八月 2008 20:43:39,218 INFO : 30...

"error_logMascot2.1.2.txt" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 18:13:56,640 INFO : Check FASTA validity 30 八月 2008 18:13:56,640 INFO : ======================================= 30 八月 2008 18:13:56,640 INFO : 30 八月 2008 18:14:03,234 INFO : MzXML2Search output 30 八月 2008 18:14:03,234 INFO : ======================================= 30 八月 2008 18:14:03,234 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_9.mzXML 30 八月 2008 18:14:03,296 INFO : 30...

"error_logMascot2.1.0.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 16:29:08,312 INFO : Check FASTA validity 30 八月 2008 16:29:08,312 INFO : ======================================= 30 八月 2008 16:29:08,312 INFO : 30 八月 2008 16:29:12,968 INFO : MzXML2Search output 30 八月 2008 16:29:12,968 INFO : ======================================= 30 八月 2008 16:29:12,968 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_9.mzXML 30 八月 2008 16:29:13,031 INFO : 30...

"110111_E2_TiO2Elu_neulossMS3.log" attached to message "Mascot 2.3 Pipeline Error with CPAS 10.3"

10 Feb 2011 20:29:20,015 INFO : Starting to run task 'org.labkey.ms2.pipeline.mascot.MascotSearchTask' at location 'webserver' 10 Feb 2011 20:29:20,031 INFO : Copying D:\LabKey Server\files\Don_Test\@files\.\110111_E2_TiO2Elu_neulossMS3.mzXML to D:\LabKey Server\files\Don_Test\@files\.\mascot\110210_MascotSearch_Test3\110111_E2_TiO2Elu_neulossMS3.work\110111_E2_TiO2Elu_neulossMS3.mzXML 10 Feb 2011...

"log_adina.txt" attached to message "Basic Install Problem - Sequest Queue"

06 Feb 2009 14:42:04,984 INFO : Moving C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work\sequest.params to C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\sequest.params 06 Feb 2009 14:42:05,109 INFO : MzXML2Search output 06 Feb 2009 14:42:05,125 INFO : ======================================= 06 Feb 2009 14:42:05,125 INFO : Working directory is C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work...

"error2.txt" attached to message "Mascot in LabKey 8.3"

11 Dec 2008 16:03:44,777 INFO : Mascot search for test_clontech_c2 11 Dec 2008 16:03:44,777 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : Check FASTA validity 11 Dec 2008 16:03:44,793 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : 11 Dec 2008 16:03:44,839 INFO : MzXML2Search output 11 Dec 2008 16:03:44,839 INFO : =======================================...

"FractionwithError.log" attached to message "Enzyme is not available in mascot seaching"

02 九月 2008 06:29:00,234 INFO : Check FASTA validity 02 九月 2008 06:29:00,234 INFO : ======================================= 02 九月 2008 06:29:00,234 INFO : 02 九月 2008 06:29:05,265 INFO : MzXML2Search output 02 九月 2008 06:29:05,265 INFO : ======================================= 02 九月 2008 06:29:05,265 INFO : running: MzXML2Search -mgf 080815_Yi_B_SCX_9.mzXML 02 九月 2008 06:29:05,359 INFO : 02...

"DSM_EC_band_1.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

11 Jun 2009 14:15:58,162 INFO : MzXML2Search output 11 Jun 2009 14:16:00,245 INFO : ======================================= 11 Jun 2009 14:16:00,260 INFO : Working directory is C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\mascot\BS_extracell\DSM_EC_band_1.work 11 Jun 2009 14:16:00,260 INFO : running: D:\Labkey server\bin\MzXML2Search -mgf C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\DSM_EC_band_1.mzXML...

"log.txt" attached to message "Failed runing xinteract"

24 ?? 2008 14:50:51,875 INFO : Mascot search for 1-1.mzXML 24 ?? 2008 14:50:51,890 INFO : ======================================= 24 ?? 2008 14:50:51,906 INFO : MzXML2Search output 24 ?? 2008 14:50:51,906 INFO : ======================================= 24 ?? 2008 14:51:15,140 INFO : running: MzXML2Search -mgf 1-1.mzXML 24 ?? 2008 14:51:15,203 INFO : 24 ?? 2008 14:51:15,203 INFO : MzXML2Search...

"080207-2.log" attached to message "Basic Install Problem - Sequest Queue"

12 Feb 2009 16:02:21,640 INFO : Sequest search for 080207-2 12 Feb 2009 16:02:21,640 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Check FASTA validity 12 Feb 2009 16:02:22,171 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Checking sequence file validity of C:\database\uniprot-js614.fasta 12 Feb 2009 16:02:23,078 INFO : 12 Feb...

"mascot_works.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 17:59:31,140 INFO : Check FASTA validity 30 八月 2008 17:59:31,140 INFO : ======================================= 30 八月 2008 17:59:31,171 INFO : 30 八月 2008 17:59:35,906 INFO : MzXML2Search output 30 八月 2008 17:59:35,906 INFO : ======================================= 30 八月 2008 17:59:35,906 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_10.mzXML 30 八月 2008 17:59:36,093 INFO : 30...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences b ON (a.orgid=b.orgid) JOIN prot.identifiers c ON (c.seqid=b.seqid) WHERE c.identifier='O32012|YPZC_BACSU' DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences...

Luminex_Assay_200-2015-06-09-1221.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"B_090310_09_G056L9_A09.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

21 May 2009 14:12:39,514 INFO : Mascot search for B_090310_09_G056L9_A09 21 May 2009 14:12:39,514 INFO : ======================================= 21 May 2009 14:12:40,296 INFO : Check FASTA validity 21 May 2009 14:12:40,296 INFO : ======================================= 21 May 2009 14:12:40,358 INFO : 21 May 2009 14:12:40,405 INFO : MzXML2Search output 21 May 2009 14:12:40,405 INFO : =======================================...