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HIV Study Tutorial
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"error_logMascot2.1.2.txt" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 18:13:56,640 INFO : Check FASTA validity 30 八月 2008 18:13:56,640 INFO : ======================================= 30 八月 2008 18:13:56,640 INFO : 30 八月 2008 18:14:03,234 INFO : MzXML2Search output 30 八月 2008 18:14:03,234 INFO : ======================================= 30 八月 2008 18:14:03,234 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_9.mzXML 30 八月 2008 18:14:03,296 INFO : 30...

"error_logMascot2.1.0.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 16:29:08,312 INFO : Check FASTA validity 30 八月 2008 16:29:08,312 INFO : ======================================= 30 八月 2008 16:29:08,312 INFO : 30 八月 2008 16:29:12,968 INFO : MzXML2Search output 30 八月 2008 16:29:12,968 INFO : ======================================= 30 八月 2008 16:29:12,968 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_9.mzXML 30 八月 2008 16:29:13,031 INFO : 30...

"110111_E2_TiO2Elu_neulossMS3.log" attached to message "Mascot 2.3 Pipeline Error with CPAS 10.3"

10 Feb 2011 20:29:20,015 INFO : Starting to run task 'org.labkey.ms2.pipeline.mascot.MascotSearchTask' at location 'webserver' 10 Feb 2011 20:29:20,031 INFO : Copying D:\LabKey Server\files\Don_Test\@files\.\110111_E2_TiO2Elu_neulossMS3.mzXML to D:\LabKey Server\files\Don_Test\@files\.\mascot\110210_MascotSearch_Test3\110111_E2_TiO2Elu_neulossMS3.work\110111_E2_TiO2Elu_neulossMS3.mzXML 10 Feb 2011...

"log_adina.txt" attached to message "Basic Install Problem - Sequest Queue"

06 Feb 2009 14:42:04,984 INFO : Moving C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work\sequest.params to C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\sequest.params 06 Feb 2009 14:42:05,109 INFO : MzXML2Search output 06 Feb 2009 14:42:05,125 INFO : ======================================= 06 Feb 2009 14:42:05,125 INFO : Working directory is C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work...

"error2.txt" attached to message "Mascot in LabKey 8.3"

11 Dec 2008 16:03:44,777 INFO : Mascot search for test_clontech_c2 11 Dec 2008 16:03:44,777 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : Check FASTA validity 11 Dec 2008 16:03:44,793 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : 11 Dec 2008 16:03:44,839 INFO : MzXML2Search output 11 Dec 2008 16:03:44,839 INFO : =======================================...

"FractionwithError.log" attached to message "Enzyme is not available in mascot seaching"

02 九月 2008 06:29:00,234 INFO : Check FASTA validity 02 九月 2008 06:29:00,234 INFO : ======================================= 02 九月 2008 06:29:00,234 INFO : 02 九月 2008 06:29:05,265 INFO : MzXML2Search output 02 九月 2008 06:29:05,265 INFO : ======================================= 02 九月 2008 06:29:05,265 INFO : running: MzXML2Search -mgf 080815_Yi_B_SCX_9.mzXML 02 九月 2008 06:29:05,359 INFO : 02...

"DSM_EC_band_1.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

11 Jun 2009 14:15:58,162 INFO : MzXML2Search output 11 Jun 2009 14:16:00,245 INFO : ======================================= 11 Jun 2009 14:16:00,260 INFO : Working directory is C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\mascot\BS_extracell\DSM_EC_band_1.work 11 Jun 2009 14:16:00,260 INFO : running: D:\Labkey server\bin\MzXML2Search -mgf C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\DSM_EC_band_1.mzXML...

"log.txt" attached to message "Failed runing xinteract"

24 ?? 2008 14:50:51,875 INFO : Mascot search for 1-1.mzXML 24 ?? 2008 14:50:51,890 INFO : ======================================= 24 ?? 2008 14:50:51,906 INFO : MzXML2Search output 24 ?? 2008 14:50:51,906 INFO : ======================================= 24 ?? 2008 14:51:15,140 INFO : running: MzXML2Search -mgf 1-1.mzXML 24 ?? 2008 14:51:15,203 INFO : 24 ?? 2008 14:51:15,203 INFO : MzXML2Search...

"080207-2.log" attached to message "Basic Install Problem - Sequest Queue"

12 Feb 2009 16:02:21,640 INFO : Sequest search for 080207-2 12 Feb 2009 16:02:21,640 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Check FASTA validity 12 Feb 2009 16:02:22,171 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Checking sequence file validity of C:\database\uniprot-js614.fasta 12 Feb 2009 16:02:23,078 INFO : 12 Feb...

"mascot_works.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 17:59:31,140 INFO : Check FASTA validity 30 八月 2008 17:59:31,140 INFO : ======================================= 30 八月 2008 17:59:31,171 INFO : 30 八月 2008 17:59:35,906 INFO : MzXML2Search output 30 八月 2008 17:59:35,906 INFO : ======================================= 30 八月 2008 17:59:35,906 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_10.mzXML 30 八月 2008 17:59:36,093 INFO : 30...

Luminex_Assay_200-2015-06-09-1229.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"B_090310_09_G056L9_A09.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

21 May 2009 14:12:39,514 INFO : Mascot search for B_090310_09_G056L9_A09 21 May 2009 14:12:39,514 INFO : ======================================= 21 May 2009 14:12:40,296 INFO : Check FASTA validity 21 May 2009 14:12:40,296 INFO : ======================================= 21 May 2009 14:12:40,358 INFO : 21 May 2009 14:12:40,405 INFO : MzXML2Search output 21 May 2009 14:12:40,405 INFO : =======================================...

"errorlog.txt" attached to message "Mascot Search Error 112"

Mascot error log file Error [M00246 - Job -16 - X00422:taxonomy] - Wed Mar 30 23:15:33 2005 - The taxonomy node file [../taxonomy/gi_taxid_prot.dmp] is missing Error [M00384 - Job -16 - X00805:fasta] - Wed Mar 30 23:28:41 2005 - gi|231051 in database NCBInr_03302005.fasta has a taxonomy id (11311) with a missing link up to 'all species'. Check that nodes.dmp is up to date Error [M00384...

"catalina.out" attached to message "Upgrade to 19.1 and Java upgrade on Linux"

Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.SetAllPropertiesRule begin WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property. Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.63 Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.VersionLoggerListener...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences b ON (a.orgid=b.orgid) JOIN prot.identifiers c ON (c.seqid=b.seqid) WHERE c.identifier='O32012|YPZC_BACSU' DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2007-01-09 15:50:06,687 JobThread-2.2 : SQL [3856] INSERT INTO exp.data ( LSID,Name,CpasType,SourceApplicationId,SourceProtocolLSID,DataFileUrl,RunId,Created,Container) VALUES ( ?,?,?,?,?,?,?,?,?); SELECT CURRVAL('exp.data_rowid_seq') ?[1] urn:lsid:mskcc.org:Data.Run-28:ScoredPepXmlFile ?[2] Scored Search Results ?[3] Data ?[4] 158 ?[5]...

"postgresql-9.4-main.log" attached to message "Error during configuration"

2016-04-07 09:18:58 CEST [1700-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 10:47:35 CEST [2381-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 11:51:59 CEST [27280-2] LOG: received smart shutdown request 2016-04-07 11:51:59 CEST [16538-1] postgres@labkey FATAL: terminating connection due to...

"helloWorld.module" attached to message "Using JQuery in a Module... Path Issue..."

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.9.4 Created-By: 1.8.0_25-b17 (Oracle Corporation) config/module.xml ...

"catalina.out" attached to message "Labkey error"

Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.62 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: May 7 2015 17:14:55 UTC Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.62.0 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener...

"labkey.log" attached to message "FastaAdmin already exists"

INFO ModuleLoader 2015-09-15 13:33:36,894 localhost-startStop-1 : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2015-09-15 13:33:39,144 localhost-startStop-1 : Initializing DbScope with the following configuration: DataSource Name:...