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Study Data Grid Tour -- Participant 249320127

Study HIV Disease Progression - Demo Study -- Participant 249320127

GenericAssay_Run2.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/30/08 520 1850 16 249318596 9/2/08 420 1770 12.2 249318596 11/23/08 185 1600 15.5 249320107 7/30/08 344 1550 13.2 249320107 9/17/08 342 1450 12.9 249320127 7/30/08 1116 2000 13.5 249320127 9/17/08 987 2000 19.3 249320127 2/8/09 1009 2100 17.3 249320127 3/12/09 1200 2200 15.4 249320489 9/26/08 435 1450 13.3 249320489 12/3/08 234 1300 16.4 ...

GenericAssay_Run2.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/30/08 520 1850 16 249318596 9/2/08 420 1770 12.2 249318596 11/23/08 185 1600 15.5 249320107 7/30/08 344 1550 13.2 249320107 9/17/08 342 1450 12.9 249320127 7/30/08 1116 2000 13.5 249320127 9/17/08 987 2000 19.3 249320127 2/8/09 1009 2100 17.3 249320127 3/12/09 1200 2200 15.4 249320489 9/26/08 435 1450 13.3 249320489 12/3/08 234 1300 16.4 ...

GenericAssay_Run2.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/30/08 520 1850 16 249318596 9/2/08 420 1770 12.2 249318596 11/23/08 185 1600 15.5 249320107 7/30/08 344 1550 13.2 249320107 9/17/08 342 1450 12.9 249320127 7/30/08 1116 2000 13.5 249320127 9/17/08 987 2000 19.3 249320127 2/8/09 1009 2100 17.3 249320127 3/12/09 1200 2200 15.4 249320489 9/26/08 435 1450 13.3 249320489 12/3/08 234 1300 16.4 ...

Status Assessment.xls

data Participant ID Source Lsid Date Day Meets Criteria for Acute Agrees to Acute Schedule Agrees to Provide Partner Info Partner #1 ID Partner #2 ID Cohort 249318596 2008-08-04 79 true true true 249320489 1 249318596 2008-11-23 190 true true true 249320489 1 249318596 2008-09-02 108 true true true 249320489 1 249318596 2009-04-17 335 true true true 249320489 1 249318596 2009-01-18...

dataset5009.tsv

ParticipantId date QCStateLabel MeetsCriteria AgreesToAccuteSchedule PartnerAgrees Partner1 Partner2 Cohort 249318596 2008-05-17 00:00:00.0 true true true 249320489 1 249318596 2008-08-04 00:00:00.0 true true true 249320489 1 249318596 2008-09-02 00:00:00.0 true true true 249320489 1 249318596 2008-11-23 00:00:00.0 true true true 249320489 1 249318596 2009-01-18 00:00:00.0 true true true...

Sample - Specimen 3 - 9352

Derive sample from Participant-249320127.Visit-2804.0.Date-2009-01-06.SpecimenID-249320619.2604... Sample Derivation Protocol - Core Sample Derivation Protocol Specimen ID 249320619.2604.640 rowId 9352 Participant ID 249320127 name Specimen 3 - 9352 Input Samples: ELISpotAssay4

Sample - Specimen 3 - 9354

Derive sample from Participant-249320127.Visit-2804.0.Date-2009-01-06.SpecimenID-249320619.2604... Sample Derivation Protocol - Core Sample Derivation Protocol Specimen ID 249320619.2604.640 rowId 9354 Participant ID 249320127 name Specimen 3 - 9354 Input Samples: ELISpotAssay4

Sample - Specimen 3

Derive sample from Participant-249320127.Visit-2804.0.Date-2009-01-06.SpecimenID-249320619.2604... Sample Derivation Protocol - Core Sample Derivation Protocol rowId 9358 Specimen ID 249320619.2604.640 name Specimen 3 Sample Description Participant ID 249320127 Input Samples: ELISpotAssay

SimpleSpecimenRepository.xls

SimpleSpecimens specimen_number Vial Id ptid Date Volume Units Specimen Type additive derivative_type Sub Additive Derivative visit_value 526515315.6 526515315.6304.370 249318596 5/17/08 1.0 ML Blood (Whole) Serum Separator Serum N/A 2404 526515315.6 526515315.6304.371 249318596 5/17/08 1.0 ML Blood (Whole) Serum Separator Serum N/A 2404 526515315.6 526515315.6304.372 249318596 5/17/08 1.0 ML...

Sample - Specimen 3

Derive sample from Participant-249320127.Visit-2804.0.Date-2009-01-06.SpecimenID-249320619.2604... Sample Derivation Protocol - Core Sample Derivation Protocol Sample Description Participant ID 249320127 name Specimen 3 rowId 9366 Method Dilution Specimen ID 249320619.2604.640 Input Samples: NAbAssay

"DataToPivot.xlsx" attached to page "Pivot Queries"

data Participant ID Date M1 M2 M3 Instrument Setting Operator Email Instrument RunName Comments 249318596 2008-06-30 543 1830 14.5000 24 john.doe ABI-QSTAR Run1 249318596 2008-06-30 520 1850 16.0000 24 john.doe ABI-QSTAR Run2 249318596 2008-09-02 420 1770 12.2000 24 john.doe ABI-QSTAR Run2 249318596 2008-11-23 185 1600 15.5000 24 john.doe ABI-QSTAR Run2 249318596 2009-01-18 261 1300 5.0000 24...

sourcecount.sql

SELECT COUNT(DISTINCT ParticipantID) AS _count, DataSet FROM StudyData WHERE ParticipantId IN ('249320127', '249320489' ) GROUP BY DataSet

specimens.tsv

# specimens record_id record_source global_unique_specimen_id lab_id unique_specimen_id ptid parent_specimen_id draw_timestamp sal_receipt_date specimen_number class_id visit_value protocol_number visit_description other_specimen_id volume volume_units stored storage_flag storage_date ship_flag ship_batch_number ship_date imported_batch_number lab_receipt_date...

LabKey.specimens

%/ةد�ذدز # labs lab_id ldms_lab_code labware_lab_code lab_name lab_upload_code is_sal is_repository is_clinic is_endpoint street_address city govering_district country postal_area description 5 435 Mont Montlake University 1 10 460 Hptc High Point Clinic 1 19 350 Delb Delridge Biomedical 1 20 510 Rain Rainier Lab Storage 1 21 515 Alki Alki University 1 ...

Advanced_Archive.specimens

advanced_repository_zip/additives.tsv # additives additive_id ldms_additive_code labware_additive_code additive 8 REDTOP 9 PLAINRED 12 LST_HEP 13 LST_CIT 1 ACD ACD Acid Citrate Dextrose 14 ORA Orasure Collection Container 15 AHP Ammonium Heparin 16 PAC Port-a-cul Transport Tube 17 CPD Citrate Phosphate Dextrose 18 PAX PAXgene Blood RNA tube 19 CPH Cell Preparation Tube Heparin 20 PBS...

GenericAssay_BadData.xls

Sheet1 participantid Date M1 M2 M3 249318596 1/18/09 261 1300 4.8 249320107 1/6/09 223 1400 37 249320127 1/6/09 897 2200 21 249320489 1/15/09 175 1200 13.3 249320897 1/3/09 1200 1890 20 Sheet2 Sheet3

GenericAssay_BadData.xls

Sheet1 participantid Date M1 M2 M3 249318596 1/18/09 261 1300 4.8 249320107 1/6/09 223 1400 37 249320127 1/6/09 897 2200 21 249320489 1/15/09 175 1200 13.3 249320897 1/3/09 1200 1890 20 Sheet2 Sheet3

Consent.xls

data participantid SequenceNum Date ParticipationConsent GeneticConsent 249318596 2404 5/17/08 249320107 2404 6/4/08 249320127 2404 7/30/08 249320489 2404 7/30/08 249320897 2404 5/1/08 249325717 2404 4/27/08 &L&D&Cdata&RPage &P/&N