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HIV Study Tutorial
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"CAexample_mini.log" attached to message "CPAS / Mascot Timeout"

01 Feb 2007 12:39:41,243 INFO : Mascot search for CAexample_mini.mzXML 01 Feb 2007 12:39:41,243 INFO : ======================================= 01 Feb 2007 12:39:41,338 INFO : MzXML2Search output 01 Feb 2007 12:39:41,338 INFO : ======================================= 01 Feb 2007 12:39:41,342 INFO : running: MzXML2Search -mgf CAexample_mini.mzXML 01 Feb 2007 12:39:41,419 INFO : 01 Feb 2007 12:39:41,420...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0952.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 Not Yet Reviewed 1292 1343 11.0 10000 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320...

"ms2.module" attached to message "Sequest Fractions XAR import failed"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 9275 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release8.2/server BuildUser: jeckels BuildTime: August 7 2008, 10:25 AM BuildOS: Windows 2003 BuildPath: D:\\release8.2\\server\\modules\\ms2 (הלא�ט+ו�¦���_��¬¦���¦...

Lab Results.xls

data ParticipantID Source_Lsid Date Day CD4+ Lymphs Hemoglobin Cohort Viral_Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227 772 1591 15.0 101344 2009-01-07...

Lab Results.xls

data Participant ID Source Lsid Date Day CD4+ (cells/mm3) Lymphs (cells/mm3) Hemoglobin Cohort Viral Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227...

dataset5007.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 1292 1343 11.0 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320 13.0 101344 2008-11-12...

"error.log" attached to message "Error comparing MS2 runs"

ERROR Table 2008-04-22 12:20:05,726 t: http-8080-Processor17 : internalExecuteQuery org.postgresql.util.PSQLException: ERROR: integer out of range at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1592) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1327) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:192)...

Luminex_Assay_200-2015-06-09-1230.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"mixture.txt" attached to message "msInspect"

# algorithm=org.fhcrc.cpas.tools.FeatureStrategyCombined # date=Wed Jan 25 18:23:44 EST 2006 # java.vendor=Sun Microsystems Inc. # java.version=1.5.0_06 # revision=2395 # user.name=piecheng scan time mz accurateMZ mass intensity charge chargeStates kl background median peaks scanFirst scanLast scanCount totalIntensity description 56 55.014 521.0833 false 0.0 7.0122375 0 1 -1.0 5.063446 0.0...

02-14A22-IgA-Biotin.xls

ENV1 (31) File Name: 02-14A22-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:50 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 02-14A22 Signed By: Josh Eckels Document ID: 9998 RP1 PMT (Volts): 687.42 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

02-14A22-IgA-Biotin.xls

ENV1 (31) File Name: 02-14A22-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:50 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 02-14A22 Signed By: Josh Eckels Document ID: 9998 RP1 PMT (Volts): 687.42 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

02-14A22-IgA-Biotin.xls

ENV1 (31) File Name: 02-14A22-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:50 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 02-14A22 Signed By: Josh Eckels Document ID: 9998 RP1 PMT (Volts): 687.42 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

02-14A22-IgA-Biotin.xls

ENV1 (31) File Name: 02-14A22-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:50 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 02-14A22 Signed By: Josh Eckels Document ID: 9998 RP1 PMT (Volts): 687.42 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

02-14A22-IgA-Biotin.xls

ENV1 (31) File Name: 02-14A22-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:50 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 02-14A22 Signed By: Josh Eckels Document ID: 9998 RP1 PMT (Volts): 687.42 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

"cleavableICAT_ms2x2_2.log" attached to message "MASCOT on a remote server, Database error"

30 Mar 2007 11:56:15,545 INFO : Mascot search for cleavableICAT_ms2x2_2.mzXML 30 Mar 2007 11:56:15,546 INFO : ======================================= 30 Mar 2007 11:56:48,260 INFO : MzXML2Search output 30 Mar 2007 11:56:48,260 INFO : ======================================= 30 Mar 2007 11:56:50,128 INFO : running: MzXML2Search -mgf cleavableICAT_ms2x2_2.mzXML 30 Mar 2007 11:56:50,151 INFO : 30 Mar...

"SmallICAT.log" attached to message "CPAS / Mascot Timeout"

25 Jan 2007 08:40:34,716 INFO : Mascot search for SmallICAT.mzXML 25 Jan 2007 08:40:34,716 INFO : ======================================= 25 Jan 2007 08:40:34,781 INFO : MzXML2Search output 25 Jan 2007 08:40:34,781 INFO : ======================================= 25 Jan 2007 08:40:34,885 INFO : running: MzXML2Search -mgf SmallICAT.mzXML 25 Jan 2007 08:40:34,909 INFO : 25 Jan 2007 08:40:34,909 INFO...

"log_0207.txt" attached to message "Mascot upload"

07 Feb 2007 11:59:07,159 INFO : Mascot search for u937_1.mzXML 07 Feb 2007 11:59:07,159 INFO : ======================================= 07 Feb 2007 11:59:07,222 INFO : MzXML2Search output 07 Feb 2007 11:59:07,222 INFO : ======================================= 07 Feb 2007 11:59:07,470 INFO : running: MzXML2Search -mgf u937_1.mzXML 07 Feb 2007 11:59:07,515 INFO : 07 Feb 2007 11:59:07,515 INFO...

Luminex_Assay_200-2015-06-09-1233.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

2020.12.03.408500v1.full.pdf

See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/346632754 An Integrated Clinical, Omic, and Image Atlas of an Evolving Metastatic Breast Cancer Preprint · December 2020 DOI: 10.1101/2020.12.03.408500 CITATIONS 0 READS 5 38 authors, including: Some of the authors of this publication are also working on these related projects: ...

"Bovine_mini.fasta" attached to message "Error XTandem Search XInteract"

>gi|15674171|30S_ribosomal_pro gi|15674171|ref|NP_268346.1| 30S ribosomal protein S18 [Lactococcus lactis subsp. lactis]�gi|13878750|sp|Q9CDN0|RS18_LACLA 30S ribosomal protein S18�gi|25294831|pir||E86898 30S ribosomal protein S18 [imported] - Lactococcus lactis subsp. lactis (strain IL1403)�gi|12725253|gb|AAK06287.1|AE006448_5 30S ribosomal protein S18 [Lactococcus lactis subsp. lactis] [MASS=9371]...