A folder of type MS2 displays the MS2 Dashboard as the default page for the folder. The MS2 Dashboard shows an overview of the MS2 data stored in the current folder.
This overview includes some of the following information. You can add or remove any of these web parts, or reposition them on the dashboard.
- MS2 Runs: A simple list of runs that have been processed and analyzed by LabKey Server. Click on the description of a run to view it in detail.
- MS2 Runs (Enhanced): A list of processed runs that offers advanced features, including comparison of run data and export functionality. It also integrates experiment information.
- MS2 Sample Preparation Runs: A list of runs conducted to prepare the MS/MS sample.
- Data Pipeline: A list of jobs processed by the data Data Processing Pipeline, including currently running jobs; jobs that have terminated in error; and all successful and unsuccessful jobs that have been run for this folder. Click on a pipeline job for more information about the job.
- Run Groups: A list of run groups associated with MS2 runs. Click on a run group's name to view its details.
- Protein Search: Provides a quick way to search for a protein identification in any of the runs in the current folder, or the current folder and all of its subfolders.
- Peptide Search: Provides a quick way to search for peptide identifications in any of the runs in the current folder, or the current folder and all of its subfolders.
If you are working in a folder of type Custom rather than one of type MS2, you can customize the folder's Portal page to display whichever web parts you prefer. See
Projects and Folders for more information about folder types.
MS2 Runs (Enhanced)
The MS2 Runs (Enhanced) web part displays detailed information about the runs in this folder. The following image shows this web part displaying sample data from the
Proteomics Tutorial.
Here you can:
- Manage, move, and delete runs
- Add selected runs to an experiment, and view experiment details
- Compare peptide, protein, and ProteinProphet results across runs
- Export data to other formats
