LabKey Server is designed with non-disruptive system integration in mind: it is highly flexible and can be extended to work with many kinds of software systems. If you do not see your particular instrument, file format, or software system below, contact LabKey for help parsing your data and to discuss options for support.
| Assay Typeoooooooo | Description | File Typesooooooooooooooooooo | Documentationooooooooooooo |
|---|---|---|---|
| ELISA | LabKey Server features graphical plate configuration for your experiments. | Excel | Tutorial: ELISA Assay |
| ELISpot | LabKey Server features graphical plate configuration for your experiments. | Excel, TXT | ELISpot Assay |
| Fluorospot | LabKey Server features graphical plate configuration for your experiments. The current implementation uses the AID MultiSpot reader. | Excel | FluoroSpot Assay |
| Flow Cytometry - FlowJo | Analyze FCS files using a FlowJo workspace. | FCS, JO, WSP | Flow Cytometry |
| Flow Cytometry - FCSExpress | LabKey Server can be used as the data store for an FCS Express installation. | FCS | FCS Express |
| HPLC | View multiple, overlayed curves and calculate the areas under curves. A file listener automatically loads new results directly from the instrument. | TXT, Excel | HPLC - High-Performance Liquid Chromatography |
| Luminex® | Import multiplexed bead arrays based on xMap technology. | Bio-Plex Excel | Luminex File Formats |
| Mass Spectrometry | Support for many aspects of proteomics research, including searches against FASTA sequence databases (XTandem, Sequest, Mascot, or Comet). Perform validations with PeptideProphet and ProteinProphet and quantitation scores using XPRESS or Q3. | mzXML | Mass Spectrometry |
| NAb | Low- and high-throughput, cross plate, and multi-virus plates are supported | Excel, CSV, TSV | NAb (Neutralizing Antibody) Assays |
| Software | Description | Documentationooooooooooooooooooo |
|---|---|---|
| Excel | Excel spreadsheet data can be loaded into LabKey for integration and analysis. You can also connect any LabKey data back to Microsoft Excel via an ODBC connection. | Tutorial: Inferring Datasets from Excel and TSV Files and ODBC: External Tool Connections |
| FCSExpress | Use LabKey as the data store for FCSExpress. | FCS Express |
| FreezerPro | Synchronize to data in a FreezerPro server. | Import FreezerPro Data |
| Galaxy | Use LabKey Server in conjunction with Galaxy to create a sequencing workflow. | |
| Illumina | Build a workflow for managing samples and sequencing results generated from Illumina instruments, such as the MiSeq Benchtop Sequencer. | |
| ImmPort | Automatically synchronize with data in the NIH Immport database. | About ImmuneSpace |
| Libra | Work with iTRAQ quantitation data. | Using Quantitation Tools |
| Mascot | Work with Mascot server data. | Set Up Mascot |
| OpenEMPI | Connect LabKey data to an Enterprise Master Patient Index. | Enterprise Master Patient Index Integration |
| PeptideProphet | View and analyze PeptideProphet results. | Step 3: View PeptideProphet Results |
| ProteinProphet | View and analyze ProteinProphet results. | Using ProteinProphet |
| Protein Annotation Databases | UniProtKB Species Suffix Map, SwissProt, TrEMBL, Gene Ontology Database, FASTA. Data in these publicly available databases can be synced to LabKey Server and combined with your Mass Spec data. | Loading Public Protein Annotation Files |
| Q3 | Load and analyze Q3 quantitation results. | Using Quantitation Tools |
| R | LabKey and R have a two-way relationship: you can make LabKey a client of your R installation, or you make R a client of the data in LabKey Server. You can also display the results of an R script inside your LabKey Server applications; the results update as the underlying data changes. | R Reports |
| RStudio | Use RStudio to design and save reports. | RStudio Integration |
| RStudio Pro | Connect to an RStudio installation. | Connect to RStudio Pro |
| REDCap | Synchronize with data in a REDCap server. | REDCap Survey Data Integration |
| Scripting Languages | LabKey Server supports all major scripting languages, including R, JavaScript, PERL, and Python. | Configure Scripting Engines |
| Skyline | Integrate with the Skyline targeted mass spectrometry tool. | Panorama - Targeted Mass Spectrometry |
| XPRESS | Load and analyze XPRESS quantitation data. | Using Quantitation Tools |
| XTandem | Load and analyze XTandem results. | Step 1: Set Up for Proteomics Analysis |
| Software | Description | Documentationooooooooooooooooooo |
|---|---|---|
| Access | Use Microsoft Access tools on data housed in LabKey. | ODBC: External Tool Connections |
| MATLAB | Use MATLAB to analyze LabKey data. | ODBC: External Tool Connections |
| Spotfire | Use the JDBC driver to access LabKey data from Spotfire. | Spotfire Integration |
| SSRS | Use SQL Server Reporting Services for creating, publishing, and managing reports. | ODBC: External Tool Connections |
| Tableau Desktop | Visualize LabKey data in Tableau via an ODBC connection. | Integrate with Tableau |
| Database | Description | Documentation |
|---|---|---|
| PostgreSQL | PostgreSQL can be installed as a primary or external data source. | External PostgreSQL Data Sources |
| MS SQL Server | MS SQL Server can be installed as a primary or external data source. | External Microsoft SQL Server Data Sources |
| SAS | SAS can be installed as an external data source. | External SAS Data Sources |
| Oracle | Oracle can be installed as an external data source. | External Oracle Data Sources |
| MySQL | MySQL can be installed as an external data source. | External MySQL Data Sources |
| Redshift | Configure an Amazon Redshift database as an external data source. | External Redshift Data Sources |
| Authentication Provider | Description | Documentation |
|---|---|---|
| CAS | Use CAS single sign on. | Configure CAS Single Sign On Authentication (SSO) |
| Duo | Use Duo Two-Factor sign on. | Configure Duo Two-Factor Authentication |
| LDAP | Authenticate with an existing LDAP server. | Configure LDAP Authentication |
| SAML | Configure a SAML authentication provider. | Configure SAML Authentication |
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