LabKey Server can use your existing Mascot or Sequest installation to match tandem spectras to peptides sequences. The advantage of such a setup is that you initiate a search directly from LabKey to X! Tandem, Mascot, and Sequest. The results are centrally managed in LabKey, facilitating comparison of results, publishing, and data sharing.

Topics:

• Set Up Mascot - Install and configure Mascot search.
• Set Up Sequest - Install and configure Sequest search.
• Set Up Comet - Install and configure Comet search.
• Working with mzML files - Enable .mzXML.gz handling by MSInspect.