The following tables describe the available user interface panels, or "web parts". Not all web parts are available in all configurations.
Web Part Name | Description | Documentation |
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Assay Batches | Displays a list of batches for a specific assay | Step 4: Work with Assay Data |
Assay List | Provides a list of available assay designs and options for managing assays | Assay List |
Assay Results | Displays a list of results for a specific assay | Step 4: Work with Assay Data |
Assay Runs | Displays a list of runs for a specific assay | Step 4: Work with Assay Data |
Assay Schedule | Define and track expectations of when and where particular assays will be run | Manage Assay Schedule |
CDS Management | Management area for the Dataspace folder type | Collaborative DataSpace Case Study |
Contacts | List of users on this server | Contacts |
Custom Protein Lists | Shows protein lists that have been added to the current folder | Using Custom Protein Annotations |
Data Classes | Capture capture complex lineage and derivation information, especially when those derivations include bio-engineering systems such as gene-transfected cells and expression systems. | DataClasses |
Data Pipeline | Configure the data pipeline for access to data files and set up long running processes | Data Processing Pipeline |
Data Transform Jobs | Provides a history of all executed ETL runs | ETL: User Interface |
Data Transforms | Lists the available ETL jobs, and buttons for running them | ETL: User Interface |
Data Views | Data browser for reports, charts, views | Data Views Browser |
Datasets | Datasets included in the study | Manage Datasets |
Enrollment Report | Simple graph of enrollment over time in a visit based study | Enrollment Report |
Experiment Runs | List of runs within an experiment | Experiment Terminology |
Feature Annotation Sets | Sets of feature/probe information used in microarray assays | Expression Matrix Assay Tutorial |
Files | The file repository panel. Upload files for sharing and import into the database | Files |
Flow Analyses | List of flow analyses that have been performed in the current folder | Step 4: View Results |
Flow Experiment Management | Tracks setting up an experiment and analyzing FCS files | Step 1: Set Up a Flow Folder |
Flow Reports | Create and view positivity and QC reports for Flow analyses | Flow Reports |
Flow Scripts | Analysis scripts each holding the gating template, rules for the compensation matrix, and which statistics and graphs to generate for an analysis | Step 1: Define a Compensation Calculation |
Genotyping Analyses | Genotyping analyses run in the current project | Example Workflow: LabKey and Galaxy |
Genotyping Overview | Options for configuring and managing a genotyping project | Set Up a Genotyping Dashboard |
Immunization Schedule | Show the schedule for treatments within a study | Manage Study Products |
Issues List | Track issues for collaborative problem solving | Step 3: Track Issues |
Issues Summary | Summary of issues in the current folder's issue tracker | Using the Issue Tracker |
List - Single | Displays the data in an individual list | Manage Lists |
Lists | Displays directory of all lists in the current folder | Manage Lists |
Manage Peptide Inventory | Search and pool peptides via this management interface | Peptide Search |
Mass Spec Search (Tabbed) | Combines "Protein Search" and "Peptide Search" for convenience | Protein Search |
Messages | Show messages in this folder | Messages |
Messages List | Short list of messages without any details | Messages |
Microarray Runs | List of microarray runs | Microarray Assay Tutorial |
MS1 Feature Search | Search by mass-to-charge ratio or retention time | MS1 |
MS1 Runs | List of MS1 runs | MS1 |
MS2 Runs | List of MS2 runs | Explore the MS2 Dashboard |
MS2 Runs Browser | Folder browser for MS2 runs | View, Filter and Export All MS2 Runs |
MS2 Runs with Peptide Counts | An MS2Extensions web part adding peptide counts with comparison and export filters | Peptide Search |
MS2 Sample Preparation Runs | List of sample preparation runs | Explore the MS2 Dashboard |
Pending MAGE-ML Files | List of pending microarray data files | Microarray Assay Tutorial |
Peptide Freezer Diagram | Diagram of peptides and their freezer locations | Peptide Search |
Peptide Search | Search for specific peptide identifications | Peptide Search |
Pipeline Files | A management interface for files uploaded through the pipeline | Data Processing Pipeline |
Projects | Provides a list of projects on your site | Projects Web Part |
Protein Search | Dashboard for protein searches by name and minimum probability | Step 6: Search for a Specific Protein |
Query | Shows results of a query as a grid | Query Web Part: Display a Query |
Report | Display the contents of a report or view | Report Web Part: Display a Report or Chart |
Run Groups | List of run groups within an analysis. | Run Groups |
Run Types | Links to a list of experiment runs filtered by type | Experiment Terminology |
Sample Sets | Sets of samples that have been uploaded for inclusion in assays/experiments | Sample Sets |
Search | Text box to search wiki & other modules for a search string | Search |
Sequence Runs | List of genotyping sequencing runs | Example Workflow: LabKey and Galaxy |
Specimen Report | Summary report on the specimen repository | Generate Specimen Reports |
Specimen Search | Search the specimen repository | View Specimen Data |
Specimen Tools | Buttons for common specimen repository tasks | Step 3: Request Specimens (User) |
Specimens | List of specimens by type | View Specimen Data |
Study Data Tools | Button bar for common study analysis tasks. Buttons include, Create A New Graph, New Participant Report, etc. | Step 2: Study Data Dashboards |
Study List | Displays basic study information (title, protocol, etc.) in top-down document fashion. | Study Tour |
Study Overview | Management links for a study folder. | Study Tour |
Study Protocol Summary | Overview of a Study Protocol (number of participants, etc). | Study |
Study Schedule | Tracks data collection over the span of the study. | Study Schedule |
Participant Details | Dashboard view for a particular study participant. | Study Tour |
Participant List | Interactive list of participants. Filter participants by group and cohort. | Study Tour |
Survey Designs | A list of available survey designs/templates to base surveys on. | Survey Designer: Basics |
Surveys | A list of survey results, completed by users. | Survey Designer: Basics |
Vaccine Design | Define immunogens, adjuvants, and antigens you will study | Create a Vaccine Study Design |
Vaccine Study Protocols | List of current vaccine protocols (deprecated interface) | Create a Vaccine Study Design |
Views | List of the data views in the study, including R views, charts, SQL queries, etc. | Customize Grid Views |
Wiki | Displays a wiki page. | Wikis |
Workbooksmakecolumnwider | Provides a light-weight container for managing smaller data files. | Workbooks |