This topic is under construction for the 24.3 (March 2024) release of LabKey Server with embedded Tomcat 10. For the previous documentation, click here.
The Enhanced MS2 Sequest Pipeline allows LabKey Server to use the sequest.exe and makedb.exe utilities that come with Proteome Discoverer 1.1 from Thermo Fisher to perform MS2 searches. The Enhanced MS2 Sequest Pipeline uses the SEQUEST search engine installed with Proteome Discoverer 1.1 to perform the MS2 searches. Proteome Discover can be installed either on LabKey Server or can be installed on a remote computer.
There are 2 ways that the Enhanced Sequest Pipeline can be installed. The first is to install the LabKey Remote Pipeline Server software on an existing computer with Proteome Discoverer installed. The second is to install Proteome Discoverer on the same computer as the LabKey Server.
Install the LabKey Remote Pipeline Server on an existing computer with Proteome Discoverer
TBD