LabKey Server provides a broad range of tools for research using mass spectrometry techniques, including:
Premium Feature — Available with a Panorama Premium Edition of LabKey Server or when using PanoramaWeb. Learn more or contact LabKey.

Targeted Mass Spectrometry

  • Panorama - a web-based collaboration tool for Skyline targeted mass spectrometry documents
  • Automating instrument quality control / system suitability
  • Support for small molecule experiments

Documentation


Discovery Proteomics

Premium Resource - The ms2 module is a legacy feature set available to existing users of it with a Premium Edition of LabKey Server. Learn more or contact LabKey.
  • Managing, analyzing, and sharing high volumes of tandem mass spectrometry data, employing open-source tools provided by the Trans Proteomic Pipeline, developed by the Institute for Systems Biology
  • Searches against FASTA sequence databases using tools such as X! Tandem, Sequest, Mascot, or Comet
  • Analysis by PeptideProphet and ProteinProphet
  • Quantitation analysis on scored results using XPRESS and Q3

Documentation

You can find documentation of the ms2 module and accompanying legacy features in the documentation archives here:

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