[Panorama - Targeted Proteomics] [Discovery Proteomics Tutorial] [MS2 Demo]

LabKey Server provides a broad range of mass spec tools, including:

Targeted Mass Spectrometry

  • Panorama - a web-based collaboration tool for Skyline targeted proteomics documents
  • Automating instrument quality control / system suitability
  • Support for small molecule experiments

Discovery Proteomics

  • Managing, analyzing, and sharing high volumes of tandem mass spectrometry data, employing open-source tools provided by the Trans Proteomic Pipeline, developed by the Institute for Systems Biology
  • Searches against FASTA sequence databases using tools such as X! Tandem, Sequest, Mascot, or Comet
  • Analysis by PeptideProphet and ProteinProphet
  • Quantitation analysis on scored results using XPRESS and Q3

Documentation Topics

Mass Spectrometry Installations

LabKey Server powers proteomics repositories at the following institutions:

Discussion

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