This wiki page contains embedded web parts.

Click view source to review the syntax that inserts each of these web parts.

Embedded Query Web Part

Module Inventory 
QueryGrid ViewsReportsChartsExport PrintPaging
detailsAnnouncements17.1Message Board and Discussion ServiceLabKeyApache 2.0
detailsAudit17.1Audit Log ServiceLabKeyApache 2.0
detailsBigIron17.1Additional Database SupportLabKeyApache 2.0
detailsBuildReports16.34Build Reports ServiceLabKeyApache 2.0
detailsCAS17.1CAS SSO Authentication ServiceLabKeyLabKey Software License
detailsCore17.1Administration and Essential ServicesLabKeyApache 2.0
detailsDataIntegration17.1Extract Tranform Load (ETL) ServiceLabKeyApache 2.0
detailsDuo17.1Duo Authentication ServiceLabKeyLabKey Software License
detailsElisa17.1Enzyme-Linked ImmunoSorbant Assay (ELISA)LabKeyApache 2.0
detailsELISpotAssay17.1Enzyme-Linked ImmunoSpot (ELISpot) AssayLabKeyApache 2.0
detailsExperiment17.1Experiment ServiceLabKeyApache 2.0
detailsFileContent17.1File Content ServiceLabKeyApache 2.0
detailsFlow17.1Flow CytometryLabKeyApache 2.0
detailsIssues17.1Issue Tracking ServiceLabKeyApache 2.0
detailsList17.1List ServiceLabKeyApache 2.0
detailsLuminex17.1Luminex AssayLabKeyApache 2.0
detailsMicroarray17.1Microarray AssayLabKeyApache 2.0
detailsMothership17.1Exception Report ServiceLabKeyApache 2.0
detailsMS117.1MS1LabKeyApache 2.0
detailsMS217.1MS2LabKeyApache 2.0
detailsNab17.1Neutralizing Antibody AssayLabKeyApache 2.0
detailsOAuth17.1OAuth Authentication ServiceLabKeyLabKey Software License
detailsPipeline17.1Pipeline ServiceLabKeyApache 2.0
detailsPremium17.1Premium FeaturesLabKeyLabKey Software License
detailsQuery17.1Query ServiceLabKeyApache 2.0
detailsREDCap17.1RedCap Survey IntegrationLabKeyLabKey Software License
detailsSAML17.1SAML Authentication ServiceLabKeyLabKey Software License
detailsSearch17.1Search ServiceLabKeyApache 2.0
detailsStudy17.1Study and Assay ServiceLabKeyApache 2.0
detailsSurvey17.1Survey ServiceLabKeyApache 2.0
detailsVisualization17.1Visualization ServiceLabKeyApache 2.0
detailsWiki17.1Wiki ServiceLabKeyApache 2.0

Embedded Doc Search Box


Embedded Content from Another Wiki

Genomics Workflows 
LabKey Server's genotyping and Illumina modules may require significant customization and assistance, so they are not included in standard LabKey distributions. Developers can build these modules from source code in the LabKey repository. Please contact LabKey to inquire about support options.

LabKey Server provides data management and workflow automation for DNA sequencing and genotyping experiments. Using LabKey Server, you can:
  • Manage and build dictionaries of reference sequences, including associated sample and run-specific information.
  • Import and manage genotyping data: reads, quality scores, metadata, and metrics.
  • Analyze reads directly in LabKey Server or export to FASTQ files for use in other tools.
  • Initiate genotyping analyses using Galaxy. LabKey sends selected reads, sample information, and reference sequences to Galaxy, and uses the Galaxy web API to load this data into a new Galaxy data library.
  • Automatically import results when the Galaxy workflow is complete.
  • Store large Illumina sequence data as files in the file system, with links to sample information and ability to export subsets of sequencing data.

Supported Instruments

The genotyping tools are designed to support import, management, and analysis of sequencing data from:
  • Roche 454 instruments (GS Junior and GS FLX)
  • Illumina instruments (for example, MiSeq Benchtop Sequencer)
  • PacBio Sequencer by PacBio Systems
We are currently expanding sequencing support to include new instruments and new analysis methods. We are always interested in partnering with institutions who want to contribute to this effort. Contact us to join this effort.



Embedded Table of Contents

My Pages 

expand all collapse all

Embedded Files Web Part





expand all collapse all