This wiki page contains embedded web parts.

Click view source to review the syntax that inserts each of these web parts.

Embedded Query Web Part

Name Version Label Organization License
10MinuteTutorial17.2   
Announcements17.21Message Board and Discussion ServiceLabKeyApache 2.0
API17.2Internal API classesLabKeyApache 2.0
Audit17.2Audit Log ServiceLabKeyApache 2.0
BigIron17.2Additional Database SupportLabKeyApache 2.0
BuildReports17.2Build Reports ServiceLabKeyApache 2.0
CAS17.2CAS SSO Authentication ServiceLabKeyLabKey Software License
CDISC_ODM17.2CDISC ODM Integration Apache 2.0
Core17.21Administration and Essential ServicesLabKeyApache 2.0
DataIntegration17.2Extract Tranform Load (ETL) ServiceLabKeyApache 2.0
Duo17.2Duo Authentication ServiceLabKeyLabKey Software License
Elisa17.2Enzyme-Linked ImmunoSorbant Assay (ELISA)LabKeyApache 2.0
ELISpotAssay17.2Enzyme-Linked ImmunoSpot (ELISpot) AssayLabKeyApache 2.0
Experiment17.24Experiment ServiceLabKeyApache 2.0
FCSExpress17.2   
FileContent17.2File Content ServiceLabKeyApache 2.0
Flow17.2Flow CytometryLabKeyApache 2.0
Internal17.2Internal classes and resourcesLabKeyApache 2.0
Issues17.2Issue Tracking ServiceLabKeyApache 2.0
List17.2List ServiceLabKeyApache 2.0
Luminex17.2Luminex AssayLabKeyApache 2.0
Microarray17.2Microarray AssayLabKeyApache 2.0
Mothership17.2Exception Report ServiceLabKeyApache 2.0
MS117.2MS1LabKeyApache 2.0
MS217.2MS2LabKeyApache 2.0
Nab17.2Neutralizing Antibody AssayLabKeyApache 2.0
OAuth17.2OAuth Authentication ServiceLabKeyLabKey Software License
Pipeline17.21Pipeline ServiceLabKeyApache 2.0
Premium17.2Premium FeaturesLabKeyLabKey Software License
Query17.21Query ServiceLabKeyApache 2.0
REDCap17.2RedCap Survey IntegrationLabKeyLabKey Software License
SAML17.2SAML Authentication ServiceLabKeyLabKey Software License
Search17.2Search ServiceLabKeyApache 2.0
Study17.23Study and Assay ServiceLabKeyApache 2.0
Survey17.2Survey ServiceLabKeyApache 2.0
TargetedMS17.21   
Visualization17.2Visualization ServiceLabKeyApache 2.0
Wiki17.2Wiki ServiceLabKeyApache 2.0


Embedded Doc Search Box



Embedded Content from Another Wiki

Overview

This tutorial walks you through importing, annotating and interpreting the tabular results (often provided in a spreadsheet) of a custom assay. You will:
  • Set up a new assay design, to capture both the core data and the contextual information ("metadata") about the experiment.
  • Perform validation as you upload sample data.
  • Quickly visualize the data, allowing you to confirm a valid run.
  • Integrate quality controlled assay data with other information in a study.

The "General Purpose" Assay Type (GPAT)

As part of this tutorial, we will create an assay design based on a "general purpose assay type", or "GPAT", one of LabKey Server's many tools for working with instrument data. This assay type provides a flexible format for describing your experimental results, so that many sets of experimental results can be imported to LabKey Server using the pattern specified in the design. The structure of an assay design may include:
  • the type and format of experimental result files
  • contextual information about the experiment
  • the definition of summaries or visualizations appropriate for sharing
Assay designs also help to ensure that appropriate data points are collected for each experimental run loaded into the server. For any manual data entry steps, LabKey Server automatically generates the appropriate data entry pages based on the assay design. The design can specify required and optional data fields, default values for fields, as well as pick-lists of standard values, thereby reducing the incidence of errors when entering data.

Tutorial Steps

You can see an interactive example of the completed application this tutorial will build: here. The datasets created from these assays through the copy-to-study process can be seen in the Study Demo.

First Step



Embedded Table of Contents


previousnext
 
expand all collapse all


Embedded Files Web Part



Discussion

previousnext
 
expand all collapse all