Mass Spectrometry: /Documentation

Mass Spectrometry

Documentation

Mass Spectrometry

LabKey Server provides a broad range of tools for research using mass spectrometry techniques, including:

Targeted Mass Spectrometry
Discovery Proteomics Legacy feature

Premium Feature — Available with a Panorama Premium Edition of LabKey Server or when using PanoramaWeb. Learn more or contact LabKey.

Targeted Mass Spectrometry

Panorama - a web-based collaboration tool for Skyline targeted mass spectrometry documents
Automating instrument quality control / system suitability
Support for small molecule experiments

Documentation

Panorama: Targeted Mass Spectrometry - Web-based collaboration for Skyline documents.

Resources on PanoramaWeb - See tutorials, video demonstrations, and published experiments on PanoramaWeb.org.

Discovery Proteomics

Premium Resource - The ms2 module is a legacy feature set available to existing users of it with a Premium Edition of LabKey Server. Learn more or contact LabKey.

Managing, analyzing, and sharing high volumes of tandem mass spectrometry data, employing open-source tools provided by the Trans Proteomic Pipeline, developed by the Institute for Systems Biology
Searches against FASTA sequence databases using tools such as X! Tandem, Sequest, Mascot, or Comet
Analysis by PeptideProphet and ProteinProphet
Quantitation analysis on scored results using XPRESS and Q3