| Web Part Name | Description | Documentation |
|---|
| Assay Batches | Displays a list of batches for a specific assay | Work with Assay Data |
| Assay List | Provides a list of available assay designs and options for managing assays | Assay List |
| Assay Results | Displays a list of results for a specific assay | Work with Assay Data |
| Assay Runs | Displays a list of runs for a specific assay | Work with Assay Data |
| CDS Management | Management area for the Dataspace folder type | Collaborative DataSpace Case Study |
| Contacts / Project Contacts | List of users in the current project (members of any project group) | Contact Information |
| Custom Protein Lists | Shows protein lists that have been added to the current folder | Mass Spectrometry |
| Data Classes | Capture capture complex lineage and derivation information, especially when those derivations include bio-engineering systems such as gene-transfected cells and expression systems. | Data Classes |
| Data Pipeline | Configure the data pipeline for access to data files and set up long running processes | Data Processing Pipeline |
| Data Transform Jobs | Provides a history of all executed ETL runs | ETL: User Interface |
| Data Transforms | Lists the available ETL jobs, and buttons for running them | ETL: User Interface |
| Data Views | Data browser for reports, charts, views | Data Views Browser |
| Datasets | Datasets included in the study | Datasets Web Part |
| Experiment Runs | List of runs within an experiment | Experiment Terminology |
| Files | The file repository panel. Upload files for sharing and import into the database | Files |
| Flow Analyses | List of flow analyses that have been performed in the current folder | Step 1: Customize Your Grid View |
| Flow Experiment Management | Tracks setting up an experiment and analyzing FCS files | Flow Dashboard Overview |
| Flow Reports | Create and view positivity and QC reports for Flow analyses | Flow Reports |
| Flow Scripts | Analysis scripts each holding the gating template, rules for the compensation matrix, and which statistics and graphs to generate for an analysis | Step 5: Flow Quality Control |
| Issue Definitions | Define properties of an issue tracking list | Issue Tracker: Administration |
| Issues List | Track issues for collaborative problem solving | Issue Tracker: Administration |
| Issues Summary | Summary of issues in the current folder's issue tracker | Issue Tracker: Administration |
| List - Single | Displays the data in an individual list | List Web Parts |
| Lists | Displays directory of all lists in the current folder | List Web Parts |
| Mail Record | Test/development resource for email configuration. | Test Email |
| Manage Peptide Inventory | Search and pool peptides via this management interface | Mass Spectrometry |
| Mass Spec Search (Tabbed) | Combines "Protein Search" and "Peptide Search" for convenience | Mass Spectrometry |
| Messages | Show messages in this folder | Messages Web Part |
| Messages List | Short list of messages without any details | Message List Web Part |
| MS2 Runs | List of MS2 runs | Mass Spectrometry |
| MS2 Runs Browser | Folder browser for MS2 runs | Mass Spectrometry |
| MS2 Runs with Peptide Counts | An MS2Extensions web part adding peptide counts with comparison and export filters | Peptide Search |
| MS2 Sample Preparation Runs | List of sample preparation runs | Mass Spectrometry |
| Peptide Freezer Diagram | Diagram of peptides and their freezer locations | Mass Spectrometry |
| Peptide Search | Search for specific peptide identifications | Mass Spectrometry |
| Pipeline Files | A management interface for files uploaded through the pipeline | Data Processing Pipeline |
| Projects | Provides a list of projects on your site | Projects Web Part |
| Protein Search | Dashboard for protein searches by name and minimum probability | Mass Spectrometry |
| Query | Shows results of a query as a grid | Query Web Part |
| Report | Display the contents of a report or view | Report Web Part: Display a Report or Chart |
| Run Groups | List of run groups within an analysis. | Run Groups |
| Run Types | Links to a list of experiment runs filtered by type | Experiment Terminology |
| Sample Types | Collections of samples that share columns and properties | Samples |
| Search | Text box to search wiki & other modules for a search string | Search |
| Sequence Runs | List of genotyping sequencing runs | |
| Study Data Tools | Button bar for common study analysis tasks. Buttons include, Create A New Graph, New Participant Report, etc. | Step 1: Study Dashboards |
| Study List | Displays basic study information (title, protocol, etc.) in top-down document fashion. | |
| Study Overview | Management links for a study folder. | Step 2: Study Reports |
| Study Protocol Summary | Overview of a Study Protocol (number of participants, etc). | Study |
| Study Schedule | Tracks data collection over the span of the study. | Study Schedule |
| Subfolders | Lists the subfolders of the current folder. | Subfolders Web Part |
| Participant Details | Dashboard view for a particular study participant. | |
| Participant List | Interactive list of participants. Filter participants by group and cohort. | |
| Survey Designs | A list of available survey designs/templates to base surveys on. | Tutorial: Survey Designer, Step 1 |
| Surveys | A list of survey results, completed by users. | Tutorial: Survey Designer, Step 1 |
| Views | List of the data views in the study, including R views, charts, SQL queries, etc. | Customize Grid Views |
| Wiki | Displays a wiki page. | Wiki Admin Guide |
| Workbooksmakecolumnwider | Provides a light-weight container for managing smaller data files. | Workbooks |
