This wiki page contains embedded web parts.

Click view source to review the syntax that inserts each of these web parts.

Embedded Query Web Part

Module Inventory 
QueryGrid ViewsReportsChartsExport PrintPaging
 
Name
Version
Label
Organization
License
 details10MinuteTutorial16.3   
detailsAnnouncements16.3Message Board and Discussion ServiceLabKeyApache 2.0
detailsAudit16.31Audit Log ServiceLabKeyApache 2.0
detailsBigIron16.3Additional Database SupportLabKeyApache 2.0
detailsBuildReports16.34Build Reports ServiceLabKeyApache 2.0
detailsCAS16.3CAS SSO Authentication ServiceLabKeyLabKey Software License
detailsCore16.32Administration and Essential ServicesLabKeyApache 2.0
detailsDataIntegration16.3Extract Tranform Load (ETL) ServiceLabKeyApache 2.0
detailsDuo16.3Duo Authentication ServiceLabKeyLabKey Software License
detailsElisa16.3Enzyme-Linked ImmunoSorbant Assay (ELISA)LabKeyApache 2.0
detailsELISpotAssay16.3Enzyme-Linked ImmunoSpot (ELISpot) AssayLabKeyApache 2.0
detailsExperiment16.34Experiment ServiceLabKeyApache 2.0
detailsFCSExpress16.3   
detailsFileContent16.3File Content ServiceLabKeyApache 2.0
detailsFlow16.3Flow CytometryLabKeyApache 2.0
detailsIssues16.3Issue Tracking ServiceLabKeyApache 2.0
detailsList16.3List ServiceLabKeyApache 2.0
detailsLuminex16.32Luminex AssayLabKeyApache 2.0
detailsMicroarray16.3Microarray AssayLabKeyApache 2.0
detailsMothership16.3Exception Report ServiceLabKeyApache 2.0
detailsMS116.3MS1LabKeyApache 2.0
detailsMS216.31MS2LabKeyApache 2.0
detailsNab16.31Neutralizing Antibody AssayLabKeyApache 2.0
detailsOAuth16.3OAuth Authentication ServiceLabKeyLabKey Software License
detailsPipeline16.3Pipeline ServiceLabKeyApache 2.0
detailsPremium16.31Premium FeaturesLabKeyLabKey Software License
detailsQuery16.3Query ServiceLabKeyApache 2.0
detailsREDCap16.3RedCap Survey IntegrationLabKeyLabKey Software License
detailsSAML16.3SAML Authentication ServiceLabKeyLabKey Software License
detailsSearch16.31Search ServiceLabKeyApache 2.0
detailsStudy16.3Study and Assay ServiceLabKeyApache 2.0
detailsSurvey16.3Survey ServiceLabKeyApache 2.0
detailsTargetedMS16.33   
detailsVisualization16.3Visualization ServiceLabKeyApache 2.0
detailsWiki16.3Wiki ServiceLabKeyApache 2.0


Embedded Doc Search Box

Search


Embedded Content from Another Wiki

Genomics Workflows 
LabKey Server's genotyping and Illumina modules may require significant customization and assistance, so they are not included in standard LabKey distributions. Developers can build these modules from source code in the LabKey repository. Please contact LabKey to inquire about support options.

LabKey Server provides data management and workflow automation for DNA sequencing and genotyping experiments. Using LabKey Server, you can:
  • Manage and build dictionaries of reference sequences, including associated sample and run-specific information.
  • Import and manage genotyping data: reads, quality scores, metadata, and metrics.
  • Analyze reads directly in LabKey Server or export to FASTQ files for use in other tools.
  • Initiate genotyping analyses using Galaxy. LabKey sends selected reads, sample information, and reference sequences to Galaxy, and uses the Galaxy web API to load this data into a new Galaxy data library.
  • Automatically import results when the Galaxy workflow is complete.
  • Store large Illumina sequence data as files in the file system, with links to sample information and ability to export subsets of sequencing data.

Supported Instruments

The genotyping tools are designed to support import, management, and analysis of sequencing data from:
  • Roche 454 instruments (GS Junior and GS FLX)
  • Illumina instruments (for example, MiSeq Benchtop Sequencer)
  • PacBio Sequencer by PacBio Systems
We are currently expanding sequencing support to include new instruments and new analysis methods. We are always interested in partnering with institutions who want to contribute to this effort. Contact us to join this effort.

Documentation

Resources



Embedded Table of Contents

My Pages 

previousnext
 
expand all collapse all


Embedded Files Web Part

discussion

Discussion

Search 

Pages 

previousnext
 
expand all collapse all